SpatialDDLS-package	SpatialDDLS-package
barErrorPlot	barErrorPlot
barPlotCellTypes	barPlotCellTypes
blandAltmanLehPlot	blandAltmanLehPlot
calculateEvalMetrics	calculateEvalMetrics
cell.names	cell.names
cell.names,PropCellTypes-method	cell.names
cell.names<-	cell.names
cell.names<-,PropCellTypes-method	cell.names
cell.types	cell.types
cell.types,DeconvDLModel-method	cell.types
cell.types<-	cell.types
cell.types<-,DeconvDLModel-method	cell.types
corrExpPredPlot	corrExpPredPlot
createSpatialDDLSobject	createSpatialDDLSobject
deconv.spots	deconv.spots
deconv.spots,SpatialDDLS-method	deconv.spots
deconv.spots<-	deconv.spots
deconv.spots<-,SpatialDDLS-method	deconv.spots
DeconvDLModel	DeconvDLModel-class
DeconvDLModel-class	DeconvDLModel-class
deconvSpatialDDLS	deconvSpatialDDLS
distErrorPlot	distErrorPlot
estimateZinbwaveParams	estimateZinbwaveParams
features	features
features,DeconvDLModel-method	features
features<-	features
features<-,DeconvDLModel-method	features
genMixedCellProp	genMixedCellProp
getProbMatrix	getProbMatrix
installTFpython	installTFpython
interGradientsDL	interGradientsDL
loadSTProfiles	loadSTProfiles
loadTrainedModelFromH5	loadTrainedModelFromH5
method	method
method,PropCellTypes-method	method
method<-	method
method<-,PropCellTypes-method	method
mixed.profiles	mixed.profiles
mixed.profiles,SpatialDDLS-method	mixed.profiles
mixed.profiles<-	mixed.profiles
mixed.profiles<-,SpatialDDLS-method	mixed.profiles
model	model
model,DeconvDLModel-method	model
model<-	model
model<-,DeconvDLModel-method	model
plotDistances	plotDistances
plotHeatmapGradsAgg	plotHeatmapGradsAgg
plots	plots
plots,PropCellTypes-method	plots
plots<-	plots
plots<-,PropCellTypes-method	plots
plotSpatialClustering	plotSpatialClustering
plotSpatialGeneExpr	plotSpatialGeneExpr
plotSpatialProp	plotSpatialProp
plotSpatialPropAll	plotSpatialPropAll
plotTrainingHistory	plotTrainingHistory
preparingToSave	preparingToSave
prob.cell.types	prob.cell.types
prob.cell.types,SpatialDDLS-method	prob.cell.types
prob.cell.types<-	prob.cell.types
prob.cell.types<-,SpatialDDLS-method	prob.cell.types
prob.matrix	prob.matrix
prob.matrix,PropCellTypes-method	prob.matrix
prob.matrix<-	prob.matrix
prob.matrix<-,PropCellTypes-method	prob.matrix
project	project
project,SpatialDDLS-method	project
project<-	project
project<-,SpatialDDLS-method	project
PropCellTypes	PropCellTypes-class
PropCellTypes-class	PropCellTypes-class
saveRDS	saveRDS
saveRDS,DeconvDLModel-method	saveRDS
saveRDS,saveRDS-method	saveRDS
saveRDS,SpatialDDLS-method	saveRDS
saveTrainedModelAsH5	saveTrainedModelAsH5
set	set
set,PropCellTypes-method	set
set.list	set.list
set.list,PropCellTypes-method	set.list
set.list<-	set.list
set.list<-,PropCellTypes-method	set.list
set<-	set
set<-,PropCellTypes-method	set
showProbPlot	showProbPlot
simMixedProfiles	simMixedProfiles
simSCProfiles	simSCProfiles
single.cell.real	single.cell.real
single.cell.real,SpatialDDLS-method	single.cell.real
single.cell.real<-	single.cell.real
single.cell.real<-,SpatialDDLS-method	single.cell.real
single.cell.simul	single.cell.simul
single.cell.simul,SpatialDDLS-method	single.cell.simul
single.cell.simul<-	single.cell.simul
single.cell.simul<-,SpatialDDLS-method	single.cell.simul
spatial.experiments	spatial.experiments
spatial.experiments,SpatialDDLS-method	spatial.experiments
spatial.experiments<-	spatial.experiments
spatial.experiments<-,SpatialDDLS-method	spatial.experiments
SpatialDDLS	SpatialDDLS-class
SpatialDDLS-class	SpatialDDLS-class
SpatialDDLS-Rpackage	SpatialDDLS-Rpackage
spatialPropClustering	spatialPropClustering
test.deconv.metrics	test.deconv.metrics
test.deconv.metrics,DeconvDLModel-method	test.deconv.metrics
test.deconv.metrics<-	test.deconv.metrics
test.deconv.metrics<-,DeconvDLModel-method	test.deconv.metrics
test.metrics	test.metrics
test.metrics,DeconvDLModel-method	test.metrics
test.metrics<-	test.metrics
test.metrics<-,DeconvDLModel-method	test.metrics
test.pred	test.pred
test.pred,DeconvDLModel-method	test.pred
test.pred<-	test.pred
test.pred<-,DeconvDLModel-method	test.pred
topGradientsCellType	topGradientsCellType
trainDeconvModel	trainDeconvModel
trained.model	trained.model
trained.model,SpatialDDLS-method	trained.model
trained.model<-	trained.model
trained.model<-,SpatialDDLS-method	trained.model
training.history	training.history
training.history,DeconvDLModel-method	training.history
training.history<-	training.history
training.history<-,DeconvDLModel-method	training.history
zinb.params	zinb.params
zinb.params,SpatialDDLS-method	zinb.params
zinb.params<-	zinb.params
zinb.params<-,SpatialDDLS-method	zinb.params
ZinbParametersModel	ZinbParametersModel-class
ZinbParametersModel-class	ZinbParametersModel-class
zinbwave.model	zinbwave.model
zinbwave.model,ZinbParametersModel-method	zinbwave.model
zinbwave.model<-	zinbwave.model
zinbwave.model<-,ZinbParametersModel-method	zinbwave.model
