e6af64309e549149027853281b3fe2f6 *DESCRIPTION
a5baa7759518ea15ba3bdf6b72cf730a *INDEX
f606fcedabbf04b1ab6f145362471de3 *Meta/Rd.rds
4d1492de7968466564e971368d24d147 *Meta/features.rds
ee12a6f701ddfba341990589f768ac7d *Meta/hsearch.rds
65583bf8b3d2f8f403d34000b9030c33 *Meta/links.rds
6d735e89a50298fda3c6d1e4eb2f134f *Meta/nsInfo.rds
2472aa6aebe1609cbcf5b3ff97522b1c *Meta/package.rds
359db88047d983b826fcf26b4e382cb0 *Meta/vignette.rds
42f28c8062ff1a7281791db2a912297a *NAMESPACE
168569c809e8d94b7a8298204adb0703 *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/varitas
3544d0d12c12eb50e4efa0477b219303 *R/varitas.rdb
9bced4f6927cb82fdf0e377efa773939 *R/varitas.rdx
42ce14fc5cd8366b6ea29b3807cbc783 *ascii_logo.txt
f853e31a1fdbfae3c63a7f8dee302e5c *config.yaml
3265141f6988a6a601f45b255be89ece *ctdna_defaults.yaml
5ff5bf1850631de5a9c1580433c15327 *doc/errors.R
5e239e7465a7309e71aa0ed1399b02a8 *doc/errors.Rmd
666fbd38d1a32894807923939203fb94 *doc/errors.html
564b1d394b0a133dd1f55046379838ac *doc/index.html
81b6f4f9749c0be4abb3d950c47f1540 *doc/introduction.R
06c6c6090d983843a82dd07b9a008059 *doc/introduction.Rmd
be4cb2dd1658be5f437ea7f2615ab603 *doc/introduction.html
d41d8cd98f00b204e9800998ecf8427e *extdata/bam/Sample_1.bam
d41d8cd98f00b204e9800998ecf8427e *extdata/bam/Sample_2.bam
d41d8cd98f00b204e9800998ecf8427e *extdata/fastq/2018_Sample001_R1.fastq
d41d8cd98f00b204e9800998ecf8427e *extdata/fastq/2018_Sample001_R2.fastq
d41d8cd98f00b204e9800998ecf8427e *extdata/fastq/2018_Sample002_R1.fastq
d41d8cd98f00b204e9800998ecf8427e *extdata/fastq/2018_Sample002_R2.fastq
d41d8cd98f00b204e9800998ecf8427e *extdata/fastq/2018_Sample003_R1.fastq
d41d8cd98f00b204e9800998ecf8427e *extdata/fastq/2018_Sample003_R2.fastq
d41d8cd98f00b204e9800998ecf8427e *extdata/fastq/2018_Sample004_R1.fastq
d41d8cd98f00b204e9800998ecf8427e *extdata/fastq/2018_Sample004_R2.fastq
74c76fbb043a3b7b4c975e6625f829e6 *extdata/miniseq/Example_template.csv
d41d8cd98f00b204e9800998ecf8427e *extdata/miniseq/fastq/001_S1_L001_R1_example.fastq
d41d8cd98f00b204e9800998ecf8427e *extdata/miniseq/fastq/001_S1_L001_R2_example.fastq
d41d8cd98f00b204e9800998ecf8427e *extdata/miniseq/fastq/002_S1_L001_R1_example.fastq
d41d8cd98f00b204e9800998ecf8427e *extdata/miniseq/fastq/002_S1_L001_R2_example.fastq
d41d8cd98f00b204e9800998ecf8427e *extdata/miniseq/isis/001_S1_example.vcf
d41d8cd98f00b204e9800998ecf8427e *extdata/miniseq/isis/002_S1_example.vcf
d41d8cd98f00b204e9800998ecf8427e *extdata/vcf/Sample_1.vcf
d41d8cd98f00b204e9800998ecf8427e *extdata/vcf/Sample_2.vcf
9eb51e1ee469c990f0e93ed324e618e7 *help/AnIndex
551853fc380fd05ef7954e510e2a122d *help/aliases.rds
445088cb63c37f850f585f0df81c558a *help/paths.rds
c49184e9e84a3c3de161e396770f2f5c *help/varitas.rdb
b0078b6215a4751d338ed2990f094bd2 *help/varitas.rdx
eca33dbdfc668c7212982b496f3a274d *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
1f230d2db257d53f9a4ae42b10394c77 *perl/filter.pl
5ec8d3299984d2ff49af2dbf420cbf45 *perl/run_alignment.pl
cb2bfce61cf068585e88c16f23d68c7a *perl/run_annovar.pl
3305b9fb121493817507753d58bab840 *perl/run_annovar_isis.pl
bd589f17b144745ca2b5fe123d10354c *perl/run_iDES_sample.pl
93ef207e1e2755aaa9d2618faa854f2b *perl/run_lofreq.pl
54f929b2ab36231e66bbc4767d0228e7 *perl/run_muse.pl
c81d6e172ff143e62629a10b10946d02 *perl/run_mutect.pl
31aee999bff02c7ca2545daa0f362cf8 *perl/run_post_processing.pl
2dfb92d332d8affab7f192d8e7ceed8d *perl/run_vardict.pl
3ad31f6b30b0a78aaefd87ec94f61b5a *perl/run_varscan.pl
bfc262b34dd4c850bba23eef1bd36111 *perl/target_qc.pl
11278594bf30a7edc0d7c980e1dcce6f *perl/var2vcf_valid.pl
7f588923b0586340e0cf0fcf7828e4a5 *report_template.Rmd
303f6190e3eb12f2d1bac7bf6bbe97b8 *tumour_defaults.yaml
